Thursday, August 11, 2011
Does it quack like a duck?
Any change in the status of such an iconic specimen will produce the inevitable crowing from creationists, and plenty of others have analyzed the basic misunderstanding of the creationists (which I summarized very briefly above). But I have not seen anyone else comment on one other irony of the creationists reaction to this, so I thought I would point it out. For decades, creationists have insisted Archeopteryx is not an intermediate fossil. The most common way to do this is to say this it is obviously a bird. It had feathers and could fly. Creationists like to force intermediate fossils into one category or another, rather than being intermediate between the two categories. Historically, they have almost always forced Archeopteryx into the bird category. I have never once read a creationists say that it is a dinosaur.
So how does this new analysis affect their interpretation? The new analysis says that Archeopteryx was a dinosaur, more closely related to Deinonychus than to birds. It shows that every creationist was wrong--if it must be forced into one category or another, it is into dinosaurs, not birds. But the creationists are crowing thatevolutionists were wrong, and say not a word that they have all been wrong as well. The change for evolution is minor--a change from first to second cousins, but still intermediate. But it seems to me the mistake for the creationists is great. If you insist all species clearly fit into one category or another and there can be nothing in between, then it is hard to explain how a creature that is now clearly a dinosaur could once have been universally considered clearly a bird. It is a minor change for evolution, it is a complete blow to creationists.
It is funny that they do not see this inconsistency in their own view, but not surprising. Their mode of argument is entirely negative. Any percieved mistake by evolution is considered evidence for creation, even if the mistake is even more harmful for creation. Thus they nitpick over whether peppered moths evolved, even though powerful microevolution is an absolutely essential part of the creationists model. And they declare victory in the fluidity of taxonomic classification, even though a rigid classification is essential to the creationists model.
Thursday, June 9, 2011
First I should say a little bit about the misrepresentations going on. "Junk DNA" never really was a recognized term. It includes a wide variety of DNA. Creationists try to make it refer to everything except protein coding DNA. There has never been a time that biologists thought all non-coding DNA is junk. We have always known about regulatory DNA and rRNA and tRNA, for example. Much of our DNA is selfish DNA, such as the various transposable elements. Some might consider this junk, some might not.
The most important thing to understand is that evolution does not predict the existence of junk DNA. It can explain it, but it does not require it. In fact, the existence of so much junk was a surprise at first, because many biologists had a strong adaptationist bias and assumed most structures (including DNA) have an adaptive function. One of the usual meanings of junk DNA is functionless DNA. Evolution can account for non-adaptive features and the existence of such DNA feeds into the question of how important selection is compared to other processes, such as genetic drift (selection will produce functional features, drift can produce functionless).
So the existence of junk DNA is not really an argument for evolution, since evolution neither predicts it nor denies it. It can explain it, which is necessary for any theory. Junk DNA may be an argument against design, as we will see below, but it is not a positive argument for evolution. The great strength of the junk DNA for evolution is not so much its existence, but the patterns that it forms. The presence of the exact same pseudogene inactivated with the same mutations in the same position is several organisms is strong evidence for common ancestry.
So now we get to the surprising part: the embrace of junk DNA denial by the ID movement. It appears that they have genuinely embraced a prediction. They are saying that ID predicts there will be no junk DNA. They admit its existence is a genuine problem for ID. If that is the case, then they are admitting the existence of junk DNA is a way to falsify ID.
Why would ID predict there would be no junk DNA? If you assume a logical, optimal designer, like a human engineer, who would not make wasteful or useless features, then junk DNA is a problem. Junk DNA is clearly not good engineering. So if ID predicts no junk DNA, it based on a particular version of the designer. This is a breakthrough. ID is very careful not to say anything specific about the designer, but they now seem to have done so. I wonder if they will stick with it.
Junk DNA is just one version of a common argument against creationism. There are various arguments that show evidence of poor design in nature. For example, the vertebrate eye is poorly designed in many ways--light has to pass through nerves and blood vessels to get to the photoreceptors and it has a blind spot. It is not good engineering. The panda's thumb is another classic example of an oddly designed object. Vestigial organs are similar, and analogous to junk DNA (some of it is "vestigial DNA").
How have ID proponents responded to these arguments? Sometimes they argue that the features are well-designed, but they eventually almost always fall back on the mysterious designer argument. Who are we to tell the designer how to design? God may have had some mysterious purpose. He may even have been whimsical. We cannot expect the designer to be like a human designer or engineer. If God wanted to give the panda a thumb made out of a wrist bone he could have, and just because it seems odd to us means nothing. We can't dictate how the designer designs.
When they make that argument, they move out of science and into the land of the unflasifiable. Although well designed things are evidence for a designer, poorly designed things are not evidence against the designer. The designer can make whatever he wants. The designer can be an optimizer or engineer, or he can be whimsical and mysterious. Therefore, no observation is inconsistent with design. ID actually can be a theory that makes predictions, but only if they dare to pin the designer down, and clearly say what kinds of things a designer would and would not do.
Generally, ID has not been willing to do that. All of the many examples of poor design mean nothing. For some reason, they don't do that with junk DNA. They seem to actually be saying that the designer would not make junk DNA. The designer is an optimizer, an engineer. They have pinned him down and made a prediction. If we take them at their word, ID is now testable. If much of our DNA has no function, then we have disproven ID.
It would be great if they stuck to this. The history of the movement isn't too promising. I suspect one of two possible outcomes. Either they will forever deny the evidence for junk DNA, as Wells is doing now, or they will eventually go back to the mysterious designer argument. They are good at denying clear evidence. They have denied the clear evidence of the fossil record for decades. The first tactic should work for quite awhile, but eventually they may switch to the second choice and invoke the mysterious purposes of the designer. I guess there is a third choice--treat it as a genuine prediction and reject ID when the prediction fails. I'm not holding my breath.
It seems to me that accepting the threat of junk DNA also opens ID up to the classic argument from bad design. They have nailed down their designer. He is an optimizer. Now the structure of the eye, the panda's thumb, or the recurrent laryngeal nerve are all arguments against ID. If God wouldn't make junk DNA, he wouldn't make any of them either. If an ID proponent makes an argument about junk DNA, the first thing you should do is to confirm that they are admitting the designer would not make such non-adaptive, non-optimal features.
Wednesday, June 8, 2011
A Bite of Chalk
I occasionally eat chalk in the classroom. OK, I don't actually eat chalk. But I palm a candy lick-it-stick that looks like chalk. I write on the chalk board with chalk, and then secretly switch the chalk and the candy. I pause, look at the "chalk", take a bite, and then go back to writing on the chalkboard with the chalk that I switch back into my hand. There is no reason to do this other than entertainment. I do it early in the semester to try to introduce some humor into the class and lighten the load. I also enjoy the response of the students. Many aren't sure what they saw. They rarely say anything, rather they just look somewhat dumbfounded. I eventually reveal the trick and there is much relieved laughter.
I've been doing this for around ten years now. Recently some students were talking about it, and they mentioned that they heard one time I messed up and actually ate the real chalk instead of the candy. Apparently this story is circulating. It makes for a good story--the professor's trick backfiring on himself. The picture of the professor spitting out chalk when he was trying to be clever is quite funny. It is also entirely false. I have never made that mistake. But apparently it is now part of the lore about the chalk-eating stunt.
I wonder how such distortions arise. Does someone knowingly make up a lie? Or does someone say "what if one time..." and then later the "what if" gets lost? Does it somehow become a bigger story by the small incremental embellishments that we all make when telling a story? Once the change is made and believed to be true, I can readily see why it would spread--it is a good story. However it arose, it is a good example of how easily a story changes. We need to remember that the next time you hear about a UFO or a ghost or a dramatic coincidence or any of the many other extraordinary stories we hear. If there are two versions of a story, one true and commonplace and one false and entertaining, the entertaining one is the one that will be repeated.
Monday, June 6, 2011
Random Collisions with Knowledge
One constant resource for me as a kid was the World Book Encyclopedia. We had a set on our shelves, and I was constantly running to it to look up some information. But the important thing is that I never went straight to the article I was interested in. If I was interested in something beginning with S, I would pull out the S volume and open it to a random page. I would then need to move forward or backward in the book depending on where my word was alphabetically. But first, I would look at the page and usually find something interesting and read up on it. I would then move closer to my article, but stop again, and read something again. It would typically take me at least 30 minutes before I actually got to the topic I was originally looking for, and on the way I would learn about a dozen unrelated topics. I think paging through those volumes was more critical for my education than anything I ever got in school. I learned lots of useless trivia that I still know to this day, but I also got a background in almost every field of knowledge, so that I could make sense of any more information that came my way. If I have one major intellectual strength, it is breadth of knowledge. I may not be an expert on much, but I know something about almost everything.
I was at the younger end of a large family of readers. That means there were always books lying around, from casual reading to college textbooks. I don't know how many times I would find some book, pick it up, and start reading. For almost all of the books I can remember, I have no idea whose they were. They were just sitting around and I read them. Chariots of the Gods by Van Danniken was one such book. I was fascinated and started to believe we were visited by ancient astronauts and became fascinated with the Mayans. There were other books on ESP and other kinds of pseudoscience, which I generally read uncritically. I don't know exactly when I started to become critical of these, but I eventually did. I remember looking for things on Mayans at a later age and finding none of it seemed as cool or mysterious as I remembered. Of course, that is because I was finding facts, not fantasies.
I also picked up higher quality material. One that I remember best was a college textbook that dealt with logical fallacies. I devoured that and was fascinated with it. I would start to look for logical fallacies in my life. By the time I was in high school, I already had a decent understanding of how our logic can go wrong. I was disappointed when I went to college and logical fallacies were not covered in any class I had. I assume there is some philosophy class that I could have taken that would have covered it. A day spent reading that section of a book was one of the most important readings I had in my life. I still think logical fallacies should be part of the general education requirements of every student.
One day I saw The Stranger, by Albert Camus lying around, and I picked it up and read it in one sitting. I had no idea who Camus was and was only vaguely familiar with existentialism. I appreciated the book and had that background when I was exposed to some of these ideas later.
I could go on with many examples of random books in a other areas--history, literature, psychology (actually very little natural science--I got that at the library). That was my education. Formal education only became helpful when I reached college. I learned little of use before that. I guess I learned a lot about the constitution while in high school, but that is because I actually read the constitution in the appendix of the history book when I was supposed to be doing something else. We never actually covered or read the constitution in class. It was fascinating, I don't know why it isn't read by everyone.
That doesn't happen as much now. Of course, I no longer have random books from other people lying around. The books are my books now. I get books I like and enjoy, but they are books I chose, not random collisions with knowledge. When I look things up now, I go directly to what I want. I do love the internet. There is more information at your fingertips than ever before, and I like that if I want to know what other movies I saw that actor in, I can find out in 30 seconds. But in the past, it might have taken me 30 minutes and I would find out 20 other interesting things on the way. There is something lost there. It is reflected in how the internet allows us to only find what we already agree with or already know and associate with people who think like us. It has its advantages, but it also cuts into that breadth and wider associations. I am glad I read both Van Danniken and Camus.
A fascination with errors
Every summer I go through my reading list and order a stack of books to dig into for the summer. I usually try to get a variety of topics, and this time I avoided biology. I got books on psychology and law and politics instead, but most of them are still of a skeptical nature. The two books I started reading first are the two that made me reflect on whether I just like to find mistakes. They are But They Didn't Read Me My Rights!: Myths, Oddities, and Lies About Our Legal System by Michael Cicchini and , and 50 Great Myths of Popular Psychology: Shattering Widespread Misconceptions about Human Behavior by Scott O. Lilienfeld....
As I've studied why people believe wrong things, one thing that often comes up is that most people hold on to cherished beliefs. They do not like to be told that they are wrong. They are slow to change their minds or reject previously held beliefs. Debunking a myth is as likely to reinforce belief in it as to correct it. I seem to be the opposite, and I wonder if a lot of other skeptics are too. I love to find out I was wrong. I get a thrill when I find out something I always thought was true is in fact false. The two books above both deal with correcting widely held myths.
I can't really argue that this is just my interest in science. One of the books has nothing at all to do with science. It deals with myths about the law. But it does the same thing I often do with science--exposed widely held beliefs that are wrong. Why am I attracted to this book? Is my skepticism not just a love of science, but a fascination with errors?
Many years ago, long before I was familiar with the skeptical movement or called myself a skeptic (although I definitely had a scientific and critical mind at the time) I happened to find a book on urban legends, by Harold van Brunvand. It was just lying around at the library, I picked it up, and was fascinated. I finished the book and soon read all of the other books on the topic by Brunvand. Again, these books did not deal with science. It simply dealt with stories that many people believe are true but are not. Yet again I was fascinated with the discovery of widely held beliefs that are wrong. I loved the debunking of these stories.
I very rarely find myself resisting these corrections. I change my mind readily, almost eagerly, and I remember the corrections. I guess there are a few examples I have used in my lectures that I later find out are wrong, and I do resist those for awhile. The viceroy butterfly mimicking the monarch butterfly is such a great example of Batesian mimickery, and I have used it in my teaching. When I discovered it may actually be Mullerian mimickery, I resisted and wasn't so happy to accept the correction, but usually that is not the case.
I don't know why I like finding errors. Maybe it is still just a love of the truth. Maybe I secretly feel superior by having privileged knowledge. Maybe I am fascinated by what leads to falsehood in all areas, not just science. But if I am honest, I have to admit I rather do like debunking. I like finding the truth but especially like it when the truth is contrary to popular belief. I wonder if this is common in skeptics.
I don't think that a fascination with common misconceptions makes me, or any skeptic, a negative naysayer. I do not dismiss things out of hand, and do not denigrate people who believe in errors nor do I constantly point out mistakes. I require evidence before I accept something is wrong. I very happily reject my previous beliefs if the evidence suggests I should. I am simply fascinated with errors.
While many people err by holding on to beliefs that are wrong, I wonder if I err by too readily accepting something is wrong. Have I rejected a common belief too quickly when in fact it is true? I cannot quickly think of any such examples, but I should reflect more on that. We all need to monitor ourselves for our biases.
Friday, October 29, 2010
Cell phone time traveler: did they really think this through?
The video can be seen here. I admit that the first time I saw it, the way the old woman was holding her hand to the side of her face looked remarkably like what we see all the time today with cell phones. At first Mr. Clarke seems genuinely befuddled. He can't come up with any reasonable explanation and is searching for something other than a cell phone. However, by the end his uncertainty is gone. He emphatically states that it is a cell phone.
To me, a closer look clearly shows it is not. I have no idea what she is holding. But whatever it is, she is clutching it and pressing it to her face. The item is enclosed in a fist. Her knuckles wrap around the object, and are spread out. The problem becomes apparent as Mr. Clarke tries to show how it is obviously a cell phone. He holds a cell phone to his face like the woman is holding the phone. Even his demonstration is obviously awkward. The problem is that we hold phones with the ends of our fingers. We do not wrap our knuckles around them. In his demonstration, he puts his knuckles around his phone and tries to make it seem normal, but it is not. And even his demonstration is not how the woman is holding the object. He holds his fingers together, wrapped around the phone. Her fingers are spread out, as if the object is larger than her hand. I tried to hold my cell phone with my fingers clutching it like the woman did, and I cannot do it. I use that grip on items about five times larger than my cell phone. Try it yourself.
Clarke also claims she is talking. You can briefly see her lips move (for probably a tenth of a second), but it not at all clear she is talking. Certainly it doesn't look like a conversation. If I were to venture a guess, I would say that she is holding something to her face for a toothache or something similar. In the past, dental care was much less wide spread, and chronic toothaches were common.
Clarke also has some strange idea that the old woman is actually a man in drag. He even refers to her as a him at one point. I won't even discuss this idea. It is just odd, and pointless.
However, I am not really interested in the details of what she is holding. I don't know, and we can't tell from old grainy footage. What I find interesting about Clarke's theory is how completely ridiculous it is, even granting the idea of time travel. Coming up with a theory of time travel based on two seconds of old footage is going well beyond the evidence to say the least. But let's grant the theory, just to see where it goes. I have to assume that Clarke never bothered to think beyond that.
The first obvious question is who the hell is she talking to? If she is having a conversation on her cell phone, that means there was someone else with a cell phone in 1920 as well. And if they were talking, that means there was a transmission tower sending their signals to each other. If they were more than a few miles apart, there were satellites transmitting. If they were able to dial each other, then the entire infrastructure of telephone number switching was in place. Did the time travelers really go back with all that is required to make a cell phone work? Time travel could bring a cell phone back to 1920, but it could not bring an operational cell phone.
I suppose there would be two possible replies to this. One is that they were not communicating through a cell tower but directly. This changes the claim. Then the claim is that they are talking through walkie talkies, not through cell phones. Then it is only a few decades ahead of it's time, rather than over half a century. There is no sign that she is pressing the transmit and receive buttons of a walkie talkie. The other possibility is that she it talking through time to the present. Since time travel doesn't actually happen, we can't say anything about what can and cannot happen, but it does seem absurd that cell phones signals or radio waves travel through time. Again, if this is the case she doesn't have a cell phone, she has some futuristic tricorder or something.
Even if we grant that some old woman and someone else travelled back in time with a walkie talkie to see a Chaplin movie, the story still doesn't hold up. If you travel back in time you will want to be disguised. You would need to look and dress like people of that time. The woman in the footage has done an excellent job of disguising herself. She blends in perfectly with the locals in dress and manner. Fortunately, she left her futuristic shiny Jetson's costume in the future. She then proceeded to pull out her cell phone and talk into it in the middle of a crowded street. Don't you think that would blow her cover just a little? No one in the film seems at all surprised that a woman is walking down the street talking into some block on her face. Doesn't this suggest that she was not actually doing anything surprising?
The time traveling cell phone lady is representative of a lot of pseudoscience. Find something that seems anomalous or out of place, and come to an elaborate conclusion. This is really the same thing as what Van Daniken does in Chariot's of the Gods?. Van Daniken searches artwork of ancient civilizations for things that resemble modern inventions--space ships, light bulbs, astronaut helmets, etc. He then uses these vague resemblances as evidence that alien astronauts visited our ancestors and provided them with inventions. And Van Daniken also never bothers to ask where the electricity came from to operate those light bulbs.
Tuesday, October 19, 2010
What's evolution got to do with it?
It comes as no surprise that Thomas is opposed to this research. He questions why this is necessary, with the availability of induced pluripotent stem cells (iPS cells), which do not have the ethical baggage of embryonic stem cells. It is not my goal to discuss this part of his article, although I can quickly point out that iPS cells are not yet ready for prime time. They do not seem to have quite the same characteristics as embryonic cells and there is a risk that they may be more likely to lead to cancer. Research is continuing on them and hopefully they will eventually live up to their promise, but for now they are not a full replacement for embryonic stem cells. If this research on spinal cord injuries shows promise, it could easily be adapted to iPS cells once they are more fully developed.
The reason I want to discuss this article is what comes next. After three paragraphs discussing stem cells, evolution is thrown in out of the blue:
I won't ask why he has the word benefit in scare quotes. I've read this several times, and I cannot understand the connection between evolution and stem cells. He does not make it at all clear. He just makes it as an assertion: if you are an evolutionist, you might be more liberal in your approach. Why? The strangest paragraph is the third one, where he asserts that appeals to the uniqueness of human life are likely to fall on deaf ears if you are an evolutionist. Why? What is the logic of the connection? I especially don't see why reminders of the horrors of unrestrained science would fall on deaf ears.The answer to the “why? [why do this research]” question has something to do with how we view ourselves. If you are an evolutionist who does not believe in a Creator who endowed us with the right to life, you might be more liberal in your approach to manipulating human tissue for the “benefit” of others. But that still doesn’t justify using embryonic stem cells when artificial ones appear to function just as well.
If, on the other hand, you think “playing God” is not good for the human race and that other ways to relieve suffering can, should and, in fact, are being discovered, you are more likely to want to control human urges to do whatever can be done in a laboratory.
Appeals to the uniqueness of human life are likely to fall on deaf ears if you are an evolutionist. Reminders of the horrors unrestrained scientists have created in the past are likely to be viewed as an aberration.
In retrospect, great horrors are usually seen as springing up full-formed. Many people didn’t notice the small steps that led to the Nazi Holocaust or to the selling of African slaves in the public square. Senses must first be dulled; religion trivialized; and self enthroned before tolerance for the horrific is accepted.
It is not like this type of argument surprises me. I know creationists always assert that evolution is the source of all evil, but I never have seen the logic. Why does the question of the value of human life, or the value of an embryo, or especially the ability to see past horrors, have anything to do with whether we evolved? I have heard the right to life issue debated a thousand times. People argue over what makes us human and over the consequences to the mother and over the potential of the cells. Never once have I heard an argument from either side depend on whether we are related to apes or not. There are many people who believe in evolution who are right to life. Almost all evolution believing scientists look with horror on abuses of science in the past, such as the Nazis or Tuskegee.
I believe I can identify at least a little bit of Thomas' unstated logic. As with most creationists, he makes no distinction between evolution and materialism and atheism. His real assertion is that strict materialism leads to these views. Evolution has nothing really to do with it, other than that it is a materialist explanation. Meteorology is also a materialist explanation for the weather, but he does not make the same assertion for meteorologists. Our origins or relationship to other living things is irrelevant, even to Thomas. He just uses evolutionist as a code word for atheist or materialist. He believes they are all the same thing, anyway.
So Thomas' real argument is that materialism leads to these views on stem cells (and to not seeing the horrors of the past), not evolution. But this view is also not supported. It is common for a person whose views on right or wrong comes only from one source, such as their religious conviction, to be unable to imagine that there are other possible sources. Thomas makes no effort to show that materialism leads to nihilism. His logic is simply this: my views on moral questions comes from my religious beliefs. Materialists do not share my religious beliefs, therefore there is no way they can have moral beliefs". I would think he has heard secular arguments both for and against stem cell research, or Nazi horrors, so he should understand that there are other sources for those beliefs, but he does not.
Empirical evidence fails to support Thomas. Some people who believe in evolution oppose stem cell research, some do not. Almost all of them look in horror at Nazi abuses and other abuses of science in the past. If Thomas was correct, you would expect that belief in evolution should correlate with increased likelihood of abortion. In fact, the opposite is found. Within the United States, those states with the lowest belief in evolution have the highest abortion rate. Within the developed world, those countries that have the lowest belief in evolution also have the highest abortion rate. The relationship is exactly the opposite of that predicted by Thomas.
I am not really interested in discussing stem cell research or secular versus religious ethics. I am just always a little surprised at the non sequitor of randomly inserting evolution into topics that have nothing to do with the science, and the world of hidden assumptions beneath it.
